Building Blocks of Life

Chemically accurate molecular structures of the components of DNA, RNA, and proteins — rendered from standard chemical notation, not cartoons.
Set 1

The four DNA bases — G · C · A · T

The "letters" of DNA. Guanine and Adenine are purines (fused double ring); Cytosine and Thymine are pyrimidines (single ring). In the double helix, A pairs with T (2 hydrogen bonds) and G pairs with C (3 hydrogen bonds).

DNA bases G C A T
Set 2

The four RNA bases — G · C · A · U

RNA uses the same bases as DNA except it replaces Thymine (T) with Uracil (U). (RNA also uses a different sugar — ribose instead of deoxyribose — see the next panel.)

RNA bases G C A U
Set 3

A nucleotide = phosphate + sugar + base

The single repeating unit of every nucleic acid. The only chemical difference between a DNA and an RNA building block is the sugar: RNA's ribose carries an extra hydroxyl (2′-OH) that DNA's deoxyribose lacks.

Nucleotide structure
Phosphate — the orange P groupSugar — the five-membered ringBase — adenine, shown here
Set 4

A DNA strand has direction: 5′ → 3′

This is the thing people most often confuse. A strand is not symmetric: each phosphate links one sugar's 3′ carbon to the next sugar's 5′ carbon. So one end has a free 5′ phosphate, the other a free 3′ hydroxyl. DNA polymerase only adds bases to a free 3′ end — which is why primers are always written and built 5′→3′.

5 to 3 schematic
5 nucleotide real structure
Top: the simplified schematic (easiest to read)Bottom: the real atomic structure of the same 5-nucleotide strand
Set 5

Primer & Probe — a short DNA strand

A primer and a probe are chemically the same kind of molecule: a short single strand of DNA (~18–25 nucleotides). Here are two units joined by the phosphodiester backbone — repeat this chain and you have a primer. (A probe additionally carries a fluorescent dye.)

Primer probe oligonucleotide
Set 6

The 20 standard amino acids

The building blocks of proteins. All share the same backbone (an amino group, a carboxyl group, and a central carbon); each differs only in its side chain — which determines whether it's water-loving, water-fearing, acidic, basic, or able to form special bonds.

20 amino acids